PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46837.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 286aa    MW: 32886.7 Da    PI: 10.1201
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46837.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.31.2e-171761798
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                ++p+kf+e++g  +  +  l l++++g +W+++l  +k++g+++++kGWkeF++ + L  g  +vF+++g+s f   v++f+
  KHN46837.1  1 MIPNKFVEKYG--EGLPNALFLKTPNGTEWNFNL--EKHDGKIWFQKGWKEFAEYHSLAHGHLLVFRRHGTSHF--QVHIFD 76
                69********7..447789***************..*******************************9888888..999987 PP

2B366.15.2e-21171271199
                 EEEE-..-HHHHT.T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+ v+ ps+  ++ g l l  kf+++h g+ ++  + + l+ ++gr W  k+ +   k++  + lt+GWk Fvk+n+Lk+g +++F+l++ ++ +l+v+
  KHN46837.1 171 FLVVMRPSYIQSNgGPLPLQTKFCRRHfGLLNN--RHINLQVLNGRIWPAKYMIqkMKNKTNFRLTSGWKTFVKDNNLKVGNVCTFELIDGTKLTLLVH 267
                 566777777777756689999******866644..469999***********7755566666***************************99******** PP

                 EE-S CS
          B3  96 vfrk 99 
                 +fr 
  KHN46837.1 268 IFRG 271
                 **96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100175.56E-17176No hitNo description
PROSITE profilePS5086314.903178IPR003340B3 DNA binding domain
PfamPF023626.6E-15176IPR003340B3 DNA binding domain
SMARTSM010191.3E-6178IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-20185IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-21277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.7E-24162270IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-23164270IPR015300DNA-binding pseudobarrel domain
CDDcd100179.73E-22169270No hitNo description
PfamPF023625.5E-20171271IPR003340B3 DNA binding domain
SMARTSM010192.6E-13171272IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929172272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MIPNKFVEKY GEGLPNALFL KTPNGTEWNF NLEKHDGKIW FQKGWKEFAE YHSLAHGHLL  60
VFRRHGTSHF QVHIFDLSSL EIDYPSKGTE GKTSPNHEGN KQPRNEENLE YLQPYQVRSH  120
KSVKVENMMT LPEEAQPHTD TKFKEKSKVV VANQVTALDL ASSFKPCNPF FLVVMRPSYI  180
QSNGGPLPLQ TKFCRRHFGL LNNRHINLQV LNGRIWPAKY MIQKMKNKTN FRLTSGWKTF  240
VKDNNLKVGN VCTFELIDGT KLTLLVHIFR GTNGSNCSTS QGRIDI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548489.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A0B2SRI30.0A0A0B2SRI3_GLYSO; B3 domain-containing transcription factor VRN1
STRINGGLYMA16G05110.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-40B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]